#INFO: PE => number of discordant paired end reads supporting the SV
#INFO: SR => number of split reads supporting the SV
#INFO: 1000G => 1000 Genomes Project call set
#INFO: DGV => Database of Genomic Variants
#INFO: GAP => UCSC gap regions
#INFO: inHouse => In-house database of SVs called in germline genomes
#INFO: COSMIC => COSMIC v86
#INFO: Cancer_census =>  Cancer Census COSMIC v86
#INFO: KnownFusion => Known list of fusions from NYGC and/or COSMIC
#chr1	start1	end1	chr2	start2	end2	type	score	strand1	strand2	evidence	tools	tumor--normal	info	cnv_changepoint_1	cnv_changepoint_2	splazerS_tumor	splazerS_normal
chrX	31178825	31178826	chrX	31198093	31198094	DEL	NA	+	-	[Svaba_SR=25,Svaba_PE=32],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=20,Lumpy_SR=18]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	31283107	31283107	21,31178825,31198082	0,0,0
chrX	31283085	31283086	chrX	32020632	32020633	DEL	NA	+	-	[Svaba_SR=16,Svaba_PE=26],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=20,Lumpy_SR=6]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	31283107	32080447	0,0,0	0,0,0
chrX	32059737	32059738	chrX	32274979	32274980	DEL	NA	+	-	[Svaba_SR=16,Svaba_PE=15],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=9,Lumpy_SR=12]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	32080447	32183116	14,32059739,32274975	0,0,0
chrX	32080415	32080416	chrX	32183133	32183134	DEL	NA	+	-	[Svaba_SR=19,Svaba_PE=28],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=16,Lumpy_SR=16]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	32080447	32183116	15,32080415,32183132	0,0,0
chrX	32214848	32214849	chrX	32279700	32279701	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=5],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=2,Lumpy_SR=4]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=DMD;DisruptR=DMD;ClosestL=NPM1P8;ClosestR=	32183116	32183116	4,32214850,32279699	0,0,0
chrX	34041660	34041661	chrX	34044587	34044588	DEL	NA	+	-	[Svaba_SR=21,Svaba_PE=23],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=12,Lumpy_SR=11]	manta,svaba,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;ClosestL=;ClosestR=	32183116	32183116	7,34041662,34044576	0,0,0
chr1	86871327	86871328	chr10	33097524	33097525	TRA	NA	+	+	[Svaba_SR=27,Svaba_PE=15],[Manta_PE=0,Manta_SR=0]	svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=SELENOF;DisruptR=AL121748.1;ClosestL=;ClosestR=ITGB1-DT	86871338	33097470	0,0,0	0,0,0
chr1	86871327	86871328	chr10	35830198	35830199	TRA	NA	+	+	[Svaba_SR=24,Svaba_PE=4]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=SELENOF;DisruptR=;ClosestL=;ClosestR=	86871338	33097470	7,86871329,35830200	0,0,0
chr1	150522859	150522860	chrX	138152620	138152621	TRA	NA	+	+	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=FALEC;ClosestR=	144101335	156030795	4,150522917,138152453	4,150522848,138152456
chr1	201316080	201316081	chr12	117370534	117370535	TRA	NA	+	+	[Manta_PE=0,Manta_SR=0],[Lumpy_PE=4,Lumpy_SR=1]	manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=PKP1;DisruptR=NOS1;Fusion=PKP1-NOS1;ClosestL=;ClosestR=	248576186	133264924	10,201316134,117370367	0,0,0
chr1	201316189	201316190	chr12	117370118	117370119	TRA	NA	-	-	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=PKP1;DisruptR=NOS1;Fusion=NOS1-PKP1;ClosestL=;ClosestR=	248576186	133264924	2,201316119,117370310	0,0,0
chr1	207807887	207807888	chr1	207841472	207841473	DEL	NA	+	-	[Svaba_SR=15,Svaba_PE=19],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=14,Lumpy_SR=7]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=MIR29B2CHG;DisruptR=MIR29B2CHG;ClosestL=MIR29B2;ClosestR=	248576186	248576186	7,207807885,207841471	0,0,0
chr1	224458900	224458901	chr1	224612417	224612418	DUP	NA	-	+	[Svaba_SR=71,Svaba_PE=67],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=53,Lumpy_SR=25]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=CNIH3;DisruptR=AC096537.1,CNIH3;ClosestL=;ClosestR=	248576186	248576186	0,0,0	0,0,0
chr1	224595092	224595093	chr1	224598331	224598332	DEL	NA	+	-	[Svaba_SR=65,Svaba_PE=70],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=52,Lumpy_SR=17]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=CNIH3;DisruptR=CNIH3;ClosestL=AC096537.1;ClosestR=AC096537.1	248576186	248576186	0,0,0	0,0,0
chr2	94282214	94282215	chr2	94289918	94289919	DEL	NA	+	-	[Svaba_SR=42,Svaba_PE=46],[Manta_PE=0,Manta_SR=0]	svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=	10005	10005	26,94282214,94289917	0,0,0
chr2	200450837	200450838	chrX	41507145	41507146	TRA	NA	-	+	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=SPATS2L;DisruptR=;ClosestL=;ClosestR=CASK	242183395	32183116	0,0,0	0,0,0
chr2	215041413	215041414	chr14	74200272	74200273	TRA	NA	-	+	[Manta_PE=0,Manta_SR=2]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=AC072062.1,ABCA12;DisruptR=LIN52;Fusion=LIN52-AC072062.1;ClosestL=;ClosestR=AC006349.1	242183395	106883618	6,215041378,74200242	0,0,0
chr2	231830936	231830937	chr2	231831565	231831566	DEL	NA	+	-	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=AC073476.3;ClosestR=AC073476.3	242183395	242183395	2,231830705,231831366	0,0,0
chr3	24523614	24523615	chr3	24524687	24524688	INV	NA	-	-	[Svaba_SR=96,Svaba_PE=121],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=85,Lumpy_SR=58]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=THRB-AS1;DisruptR=THRB-AS1;ClosestL=MIR4792;ClosestR=MIR4792	24523548	24523548	55,24523616,24524686	0,0,0
chr3	25359110	25359111	chr12	72273110	72273111	TRA	NA	+	-	[Svaba_SR=0,Svaba_PE=16],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=16,Lumpy_SR=22]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=RARB;DisruptR=TRHDE-AS1,TRHDE;Fusion=RARB-TRHDE;ClosestL=RNA5SP126;ClosestR=	25359526	133264924	9,25359121,72273108	0,0,0
chr3	25359220	25359221	chr10	58717808	58717809	TRA	NA	+	+	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=RARB;DisruptR=BICC1;ClosestL=RNA5SP126;ClosestR=FAM133CP	25359526	33097470	0,0,0	0,0,0
chr3	25359567	25359568	chr10	58717462	58717463	TRA	NA	+	-	[Svaba_SR=0,Svaba_PE=8],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=33,Lumpy_SR=7]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=RARB;DisruptR=BICC1;Fusion=RARB-BICC1;ClosestL=RNA5SP126;ClosestR=FAM133CP	25359527	33097470	43,25359569,58717462	0,0,0
chr3	25359567	25359568	chr12	72273293	72273294	TRA	NA	+	+	[Svaba_SR=0,Svaba_PE=10],[Manta_PE=0,Manta_SR=0]	manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=RARB;DisruptR=TRHDE-AS1,TRHDE;Fusion=RARB-TRHDE-AS1;ClosestL=RNA5SP126;ClosestR=	25359527	133264924	0,0,0	0,0,0
chr3	25694806	25694807	chr3	25695338	25695339	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=CRIP1P2;ClosestR=CRIP1P2	25359527	25359527	0,0,0	0,0,0
chr3	26390425	26390426	chr6	26193812	26193813	TRA	NA	-	-	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=HIST1H1PS1	26410780	89830	42,26390426,26193809	0,0,0
chr3	26622429	26622430	chr3	26623007	26623008	INV	NA	+	+	[Manta_PE=0,Manta_SR=0],[Lumpy_PE=102,Lumpy_SR=59]	lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=AC099754.1;DisruptR=LRRC3B;Fusion=LRRC3B+AC099754.1;ClosestL=LRRC3B;ClosestR=AC099754.1	26622389	26622389	54,26622431,26623009	0,0,0
chr3	60147025	60147026	chr3	60218814	60218815	DEL	NA	+	-	[Svaba_SR=12,Svaba_PE=21],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=16,Lumpy_SR=2]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;Cancer_census=FHIT|Tier1;DisruptL=FHIT;DisruptR=FHIT;ClosestL=;ClosestR=	26622389	26622389	4,60147027,60218813	0,0,0
chr3	60886452	60886453	chr3	61027540	61027541	DEL	NA	+	-	[Svaba_SR=20,Svaba_PE=34],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=23,Lumpy_SR=15]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=FHIT;DisruptR=FHIT;ClosestL=;ClosestR=	26622389	26622389	16,60886452,61027539	0,0,0
chr3	149380180	149380181	chr3	149380775	149380776	DEL	NA	+	-	[Manta_PE=0,Manta_SR=7]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=TM4SF1-AS1;DisruptR=TM4SF1-AS1;ClosestL=TM4SF1;ClosestR=TM4SF1	198139690	198139690	3,149380182,149380775	2,149380119,149380759
chr3	183956046	183956047	chr3	183956669	183956670	DUP	NA	-	+	[Svaba_SR=0,Svaba_PE=13]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=ABCC5;DisruptR=ABCC5;ClosestL=;ClosestR=	198139690	198139690	0,0,0	0,0,0
chr3	195502462	195502463	chr3	195503035	195503036	DEL	NA	+	-	[Manta_PE=0,Manta_SR=4]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=PPP1R2;ClosestR=PPP1R2	198139690	198139690	5,195502458,195503026	0,0,0
chr4	10537474	10537475	chr7	131828648	131828649	TRA	NA	-	+	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=CLNK;DisruptR=;ClosestL=;ClosestR=	10011	126458400	21,10537618,131828703	7,10537618,131828703
chr4	110027768	110027769	chr4	110028287	110028288	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=EGF;ClosestR=EGF	51108134	51108134	3,110027742,110028286	0,0,0
chr5	28787888	28787889	chr5	28962988	28962989	DEL	NA	+	-	[Svaba_SR=20,Svaba_PE=29],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=17,Lumpy_SR=11]	manta,svaba,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=AC008825.1;DisruptR=;ClosestL=;ClosestR=	28787898	28962928	15,28787890,28962987	0,0,0
chr6	35523627	35523628	chr6	35524143	35524144	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=TULP1;ClosestR=TULP1	64637568	64637568	4,35523611,35524142	0,0,0
chr6	138452921	138452922	chr15	23472018	23472019	TRA	NA	-	-	[Svaba_SR=16,Svaba_PE=0],[Manta_PE=0,Manta_SR=0]	manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=NHSL1;DisruptR=;ClosestL=AL391669.1;ClosestR=	170740360	23747520	0,0,0	0,0,0
chr6	138453044	138453045	chr15	23467471	23467472	TRA	NA	+	+	[Svaba_SR=24,Svaba_PE=14],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=4,Lumpy_SR=16]	manta,svaba,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=NHSL1;DisruptR=;ClosestL=AL391669.1;ClosestR=	170740360	23747520	17,138453044,23467473	0,0,0
chr6	165943309	165943310	chr10	11197016	11197017	TRA	NA	+	-	[Lumpy_PE=4,Lumpy_SR=1]	lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=LINC00473,PDE10A;DisruptR=CELF2;ClosestL=;ClosestR=	170740360	7592027	18,165943304,11197041	8,165943304,11197041
chr7	40324264	40324265	chr9	86628410	86628411	TRA	NA	+	+	[Lumpy_PE=3,Lumpy_SR=1]	lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=SUGCT;DisruptR=;ClosestL=;ClosestR=AL353613.1	16339	138313848	9,40324245,86628402	2,40324245,86628402
chr7	57403873	57403874	chr7	57436402	57436403	DEL	NA	+	-	[Svaba_SR=61,Svaba_PE=64],[Manta_PE=1,Manta_SR=0]	manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=AC237221.2;DisruptR=;ClosestL=AC237221.1;ClosestR=SAPCD2P2	16339	16339	43,57403873,57436401	0,0,0
chr7	78352521	78352522	chr7	78452931	78452932	DEL	NA	+	-	[Svaba_SR=14,Svaba_PE=22],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=18,Lumpy_SR=9]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=RPL13AP17,MAGI2;DisruptR=MAGI2;ClosestL=;ClosestR=	126105997	126105997	11,78352523,78452929	0,0,0
chr7	78560889	78560890	chr7	78628368	78628369	DEL	NA	+	-	[Svaba_SR=19,Svaba_PE=27],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=15,Lumpy_SR=14]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=MAGI2;DisruptR=MAGI2;ClosestL=;ClosestR=	126105997	126105997	17,78560889,78628367	0,0,0
chr7	86215351	86215352	chr7	86224383	86224384	DUP	NA	-	+	[Svaba_SR=13,Svaba_PE=23],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=17,Lumpy_SR=9]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=;ClosestL=SOCS5P1;ClosestR=SOCS5P1	126105997	126105997	13,86215351,86224389	0,0,0
chr7	104844619	104844620	chr7	104971854	104971855	DUP	NA	-	+	[Svaba_SR=51,Svaba_PE=63],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=47,Lumpy_SR=28]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=LHFPL3;DisruptR=LINC01004;ClosestL=AC091286.1;ClosestR=AC007384.1	126105997	126105997	30,104844620,104971856	0,0,0
chr7	110753275	110753276	chr7	110754404	110754405	DEL	NA	+	-	[Svaba_SR=30,Svaba_PE=41],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=23,Lumpy_SR=23]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=IMMP2L;DisruptR=IMMP2L;ClosestL=;ClosestR=	126105997	126105997	21,110753277,110754403	0,0,0
chr7	126106068	126106069	chr7	126526846	126526847	DEL	NA	+	-	[Svaba_SR=47,Svaba_PE=58],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=40,Lumpy_SR=24]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=GRM8;ClosestL=;ClosestR=AC000374.1	126105998	126458400	27,126106069,126526843	0,0,0
chr7	126458433	126458434	chr7	126527386	126527387	INV	NA	-	-	[Svaba_SR=40,Svaba_PE=48],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=33,Lumpy_SR=21]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=GRM8;DisruptR=GRM8;ClosestL=;ClosestR=AC000374.1	126458400	126458400	26,126458435,126527385	0,0,0
chr7	142762278	142762279	chr7	142772774	142772775	DUP	NA	-	+	[Svaba_SR=0,Svaba_PE=11]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=PRSS3P1,PRSS2;DisruptR=PRSS2;Fusion=PRSS2+PRSS3P1;ClosestL=PRSS1;ClosestR=WBP1LP1	144214183	144214183	3,142762109,142772684	4,142762316,142772891
chr7	151049569	151049570	chr15	84141972	84141973	TRA	NA	+	-	[Svaba_SR=68,Svaba_PE=60],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=36,Lumpy_SR=31]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=ASIC3;DisruptR=;ClosestL=ABCB8;ClosestR=EFL1P1	151049592	84142010	41,151049571,84141971	0,0,0
chr8	130235868	130235869	chr8	130262400	130262401	DUP	NA	-	+	[Svaba_SR=22,Svaba_PE=29],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=22,Lumpy_SR=6]	manta,svaba,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=ASAP1;DisruptR=ASAP1;ClosestL=;ClosestR=	145078494	145078494	19,130235869,130262402	0,0,0
chr9	28031836	28031837	chr9	28059141	28059142	INV	NA	+	+	[Svaba_SR=24,Svaba_PE=25],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=22,Lumpy_SR=7]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=LINGO2;DisruptR=LINGO2;ClosestL=;ClosestR=	30338983	30338983	18,28031837,28059150	0,0,0
chr9	28031864	28031865	chr9	28034468	28034469	INV	NA	-	-	[Svaba_SR=20,Svaba_PE=20],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=12,Lumpy_SR=12]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=LINGO2;DisruptR=LINGO2;ClosestL=;ClosestR=	30338983	30338983	15,28031863,28034456	0,0,0
chr9	28034287	28034288	chr9	28157693	28157694	DEL	NA	+	-	[Svaba_SR=22,Svaba_PE=27],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=22,Lumpy_SR=2]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=LINGO2;DisruptR=LINGO2;ClosestL=;ClosestR=AL451124.1	30338983	30338983	19,28034301,28157692	0,0,0
chr9	137284448	137284449	chr9	137284960	137284961	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=BX255925.2;ClosestR=BX255925.2	138313848	138313848	0,0,0	0,0,0
chr10	7017548	7017549	chr19	17286001	17286002	TRA	NA	-	+	[Svaba_SR=23,Svaba_PE=36],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=21,Lumpy_SR=14]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=;DisruptR=ANKLE1;ClosestL=;ClosestR=AC010463.1	7592026	90733	17,7017548,17286003	0,0,0
chr10	7090913	7090914	chr19	17286830	17286831	TRA	NA	+	-	[Svaba_SR=24,Svaba_PE=30],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=20,Lumpy_SR=13]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=ANKLE1;ClosestL=AL590095.1;ClosestR=AC010463.1	7592026	90733	17,7090911,17286829	0,0,0
chr10	7592409	7592410	chr18	9868619	9868620	TRA	NA	-	-	[Svaba_SR=25,Svaba_PE=21],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=12,Lumpy_SR=14]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=ITIH5;DisruptR=;ClosestL=;ClosestR=RAB31	7592027	9868589	20,7592408,9868618	0,0,0
chr10	58717661	58717662	chr12	72273293	72273294	TRA	NA	+	+	[Svaba_SR=51,Svaba_PE=16],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=11,Lumpy_SR=34]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=BICC1;DisruptR=TRHDE-AS1,TRHDE;Fusion=BICC1-TRHDE-AS1;ClosestL=FAM133CP;ClosestR=	33097470	133264924	36,58717663,72273296	0,0,0
chr10	81882049	81882050	chr10	82067909	82067910	DEL	NA	+	-	[Svaba_SR=16,Svaba_PE=8],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=4,Lumpy_SR=8]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=NRG3;DisruptR=NRG3;ClosestL=;ClosestR=	33097470	33097470	11,81882050,82067902	0,0,0
chr10	87940541	87940542	chr10	87952583	87952584	DEL	NA	+	-	[Svaba_SR=36,Svaba_PE=30],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=20,Lumpy_SR=14]	manta,svaba,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;Cancer_census=PTEN|Tier1;DisruptL=PTEN;DisruptR=PTEN;ClosestL=RPL11P3;ClosestR=RPL11P3	133787316	133787316	0,0,0	0,0,0
chr11	53098036	53098037	chr11	53333512	53333513	DUP	NA	-	+	[Svaba_SR=0,Svaba_PE=8]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=	81074540	81074540	0,0,0	0,0,0
chr11	80635259	80635260	chr11	81380200	81380201	DEL	NA	+	-	[Svaba_SR=2,Svaba_PE=4],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=2,Lumpy_SR=2]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=;ClosestL=ARL6IP1P3;ClosestR=	81074540	81382721	2,80635259,81380199	0,0,0
chr11	81074558	81074559	chr11	81382736	81382737	DEL	NA	+	-	[Svaba_SR=40,Svaba_PE=50],[Manta_PE=1,Manta_SR=0]	svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=	81074541	81382722	28,81074556,81382735	0,0,0
chr12	35361167	35361168	chr12	36868260	36868261	DEL	NA	+	-	[Manta_PE=3,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=	41087	41087	2,35361161,36868251	0,0,0
chr12	114705256	114705257	chr12	114705768	114705769	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=AC026765.2;ClosestR=AC026765.2	133264924	133264924	2,114705244,114705767	0,0,0
chr14	40748746	40748747	chr14	40774902	40774903	DUP	NA	-	+	[Svaba_SR=9,Svaba_PE=8],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=6,Lumpy_SR=5]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=	18697903	18697903	7,40748748,40774904	0,0,0
chr15	22983571	22983572	chr15	22984074	22984075	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=TUBGCP5;DisruptR=TUBGCP5;ClosestL=CYFIP1;ClosestR=CYFIP1	23747520	23747520	2,22983556,22984073	0,0,0
chr15	23440458	23440459	chr15	23461729	23461730	INV	NA	-	-	[Svaba_SR=0,Svaba_PE=12],[Manta_PE=0,Manta_SR=0]	manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=GOLGA6L2;DisruptR=;ClosestL=AC100756.2;ClosestR=GOLGA6L2	23747520	23747520	0,0,0	0,0,0
chr15	23440459	23440460	chr20	38645823	38645824	TRA	NA	-	-	[Svaba_SR=21,Svaba_PE=15],[Manta_PE=0,Manta_SR=1],[Lumpy_PE=4,Lumpy_SR=9]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=GOLGA6L2;DisruptR=ARHGAP40;Fusion=GOLGA6L2-ARHGAP40;ClosestL=AC100756.2;ClosestR=	23747520	64334067	13,23440459,38645822	0,0,0
chr15	23461731	23461732	chr20	38646023	38646024	TRA	NA	-	+	[Svaba_SR=25,Svaba_PE=12]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=ARHGAP40;ClosestL=GOLGA6L2;ClosestR=	23747520	64334067	15,23461730,38646025	0,0,0
chr15	23467471	23467472	chr15	23472018	23472019	DEL	NA	+	-	[Svaba_SR=36,Svaba_PE=2],[Manta_PE=0,Manta_SR=0]	svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=;ClosestR=	23747520	23747520	0,0,0	0,0,0
chr15	23586513	23586514	chr15	23747555	23747556	INV	NA	+	+	[Svaba_SR=41,Svaba_PE=39],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=28,Lumpy_SR=25]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=MKRN3;DisruptR=;ClosestL=AC126407.1;ClosestR=	23747520	23747521	27,23586512,23747557	0,0,0
chr15	41329093	41329094	chr15	41336311	41336312	DUP	NA	-	+	[Svaba_SR=44,Svaba_PE=46],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=32,Lumpy_SR=31]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=OIP5;DisruptR=NUSAP1;ClosestL=NUSAP1;ClosestR=OIP5	23747521	23747521	31,41329096,41336313	0,0,0
chr15	90509439	90509440	chr15	90509985	90509986	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;ClosestL=IQGAP1;ClosestR=IQGAP1	84142011	84142011	2,90509552,90510115	0,0,0
chr16	58590640	58590641	chr16	58629426	58629427	DEL	NA	+	-	[Svaba_SR=47,Svaba_PE=63],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=35,Lumpy_SR=30]	svaba,manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=CNOT1;DisruptR=CNOT1;ClosestL=AC010287.1;ClosestR=	58590672	58629426	30,58590642,58629421	0,0,0
chr16	78098254	78098255	chr16	78117164	78117165	DEL	NA	+	-	[Manta_PE=0,Manta_SR=0],[Lumpy_PE=5,Lumpy_SR=1]	manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=WWOX;ClosestL=WWOX;ClosestR=AC079414.3	90226217	90226217	2,78098256,78117162	0,0,0
chr16	78894741	78894742	chr16	79061103	79061104	DEL	NA	+	-	[Svaba_SR=24,Svaba_PE=38],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=28,Lumpy_SR=14]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=WWOX;DisruptR=WWOX;ClosestL=AC027279.1;ClosestR=AC009145.3	90226217	90226217	18,78894737,79061102	0,0,0
chr16	79652371	79652372	chr22	25679632	25679633	TRA	NA	+	+	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=;DisruptR=GRK3;ClosestL=;ClosestR=	90226217	10514978	2,79652373,25679639	0,0,0
chr17	2311394	2311395	chr17	2311947	2311948	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=SRR;DisruptR=SRR;ClosestL=HNRNPA1P16;ClosestR=HNRNPA1P16	168977	168977	2,2311374,2311946	0,0,0
chr18	68712224	68712225	chr18	68715588	68715589	DEL	NA	+	-	[Svaba_SR=24,Svaba_PE=26],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=19,Lumpy_SR=12]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=TMX3;DisruptR=CCDC102B;ClosestL=CCDC102B;ClosestR=TMX3	80263172	80263172	18,68712224,68715587	0,0,0
chr19	21500297	21500298	chr19	23111788	23111789	DEL	NA	+	-	[Svaba_SR=0,Svaba_PE=12]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;Cancer_census=ZNF429|Tier2;DisruptL=ZNF429,LINC00664;DisruptR=ZNF730;Fusion=ZNF429+ZNF730|LINC00664+ZNF730;ClosestL=AC010615.4;ClosestR=BNIP3P37	90733	90733	0,0,0	0,0,0
chr20	13180082	13180083	chr20	13183452	13183453	DEL	NA	+	-	[Svaba_SR=37,Svaba_PE=39],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=22,Lumpy_SR=27]	manta,lumpy,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;ClosestL=SPTLC3;ClosestR=SPTLC3	67260	67260	28,13180081,13183451	0,0,0
chr20	14982311	14982312	chr20	15033301	15033302	DEL	NA	+	-	[Svaba_SR=20,Svaba_PE=33],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=21,Lumpy_SR=13]	svaba,lumpy,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=MACROD2;DisruptR=MACROD2;ClosestL=;ClosestR=RNU6-115P	67260	67260	14,14982310,15033300	0,0,0
chr20	15008177	15008178	chr20	15128170	15128171	DEL	NA	+	-	[Manta_PE=0,Manta_SR=0],[Lumpy_PE=4,Lumpy_SR=1]	manta,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=MACROD2;DisruptR=MACROD2;ClosestL=RNU6-1159P;ClosestR=	67260	67260	2,15008179,15128170	0,0,0
chr20	15019977	15019978	chr20	15033195	15033196	DEL	NA	+	-	[Svaba_SR=28,Svaba_PE=28],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=17,Lumpy_SR=16]	manta,svaba,lumpy	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=MACROD2;DisruptR=MACROD2;ClosestL=RNU6-1159P;ClosestR=RNU6-115P	67260	67260	19,15019977,15033194	0,0,0
chr20	38314440	38314441	chr20	38315006	38315007	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=AL359555.1,BPI;DisruptR=AL359555.1,BPI;ClosestL=AL359555.3;ClosestR=AL359555.3	64334067	64334067	0,0,0	0,0,0
chr20	63780223	63780224	chr20	63780738	63780739	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=ZBTB46;DisruptR=ZBTB46;ClosestL=;ClosestR=	64334067	64334067	2,63780227,63780756	0,0,0
chr21	41446816	41446817	chr21	41448904	41448905	DEL	NA	+	-	[Svaba_SR=3,Svaba_PE=8],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=8,Lumpy_SR=2]	lumpy,svaba,manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=MX1;DisruptR=MX1;ClosestL=AP001610.1;ClosestR=AP001610.1	46699872	46699872	4,41446813,41448903	0,0,0
chr22	22120831	22120832	chrX	126356461	126356462	TRA	NA	+	-	[Manta_PE=0,Manta_SR=0]	manta	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;DisruptL=IGLV10-54;DisruptR=;ClosestL=ABHD17AP5;ClosestR=	10514978	156030795	0,0,0	0,0,0
chr22	33363262	33363263	chr22	33442412	33442413	DEL	NA	+	-	[Svaba_SR=28,Svaba_PE=41],[Manta_PE=0,Manta_SR=0],[Lumpy_PE=28,Lumpy_SR=17]	lumpy,manta,svaba	COLO-829-NovaSeq_80--COLO-829BL-NovaSeq_40	known=;COSMIC;DisruptL=LARGE1;DisruptR=LARGE1;ClosestL=;ClosestR=MIR4764	50808368	50808368	20,33363266,33442406	0,0,0