#INFO: PE => number of discordant paired end reads supporting the SV
#INFO: SR => number of split reads supporting the SV
#INFO: 1000G => 1000 Genomes Project call set
#INFO: DGV => Database of Genomic Variants
#INFO: GAP => UCSC gap regions
#INFO: inHouse => In-house database of SVs called in germline genomes
#INFO: COSMIC => COSMIC v86
#INFO: Cancer_census =>  Cancer Census COSMIC v86
#INFO: KnownFusion => Known list of fusions from NYGC and/or COSMIC
#chr1	start1	end1	chr2	start2	end2	type	score	strand1	strand2	evidence	tools	tumor--normal	info	cnv_changepoint_1	cnv_changepoint_2	splazerS_tumor	splazerS_normal
chrX	31178825	31178826	chrX	31198093	31198094	DEL	NA	+	-	[Svaba_SR=67,Svaba_PE=78],[Manta_PE=74,Manta_SR=66],[Lumpy_PE=53,Lumpy_SR=43]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	31283107	31283107	42,31178825,31198082	0,0,0
chrX	31283085	31283086	chrX	32020632	32020633	DEL	NA	+	-	[Svaba_SR=49,Svaba_PE=69],[Manta_PE=64,Manta_SR=54],[Lumpy_PE=55,Lumpy_SR=23]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	31283107	32080347	0,0,0	0,0,0
chrX	32059737	32059738	chrX	32274979	32274980	DEL	NA	+	-	[Svaba_SR=48,Svaba_PE=47],[Manta_PE=42,Manta_SR=44],[Lumpy_PE=26,Lumpy_SR=34]	svaba,manta,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	32080347	32274944	34,32059739,32274975	0,0,0
chrX	32080415	32080416	chrX	32183133	32183134	DEL	NA	+	-	[Svaba_SR=59,Svaba_PE=65],[Manta_PE=56,Manta_SR=52],[Lumpy_PE=39,Lumpy_SR=44]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=DMD;DisruptR=DMD;ClosestL=;ClosestR=	32080348	32183116	44,32080415,32183132	0,0,0
chrX	32214848	32214849	chrX	32279700	32279701	DEL	NA	+	-	[Svaba_SR=13,Svaba_PE=14],[Manta_PE=11,Manta_SR=11],[Lumpy_PE=7,Lumpy_SR=9]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=DMD;DisruptR=DMD;ClosestL=NPM1P8;ClosestR=	32183116	32274944	11,32214850,32279699	0,0,0
chrX	34041566	34041567	chrX	34044586	34044587	INV	NA	-	-	[Manta_PE=0,Manta_SR=58]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;ClosestL=;ClosestR=	32274944	32274944	0,0,0	0,0,0
chrX	34041660	34041661	chrX	34044587	34044588	DEL	NA	+	-	[Svaba_SR=74,Svaba_PE=89],[Manta_PE=71,Manta_SR=71],[Lumpy_PE=49,Lumpy_SR=48]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;ClosestL=;ClosestR=	32274944	32274944	22,34041662,34044576	0,0,0
chrX	54075578	54075579	chrX	54076089	54076090	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=FAM120C;DisruptR=FAM120C;ClosestL=;ClosestR=	32274944	32274944	3,54075550,54076088	0,0,0
chrX	65392192	65392193	chrX	65392712	65392713	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ZC3H12B;DisruptR=ZC3H12B;ClosestL=TLE1P1;ClosestR=TLE1P1	32274944	32274944	2,65392169,65392711	0,0,0
chrX	136588778	136588779	chrX	136589314	136589315	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=RNU6-320P;ClosestR=RNU6-320P	156030136	156030136	0,0,0	0,0,0
chr1	10037118	10037119	chr1	10037620	10037621	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=UBE4B;DisruptR=UBE4B;ClosestL=AL590639.1;ClosestR=AL590639.1	10028	10028	0,0,0	0,0,0
chr1	13450794	13450795	chr1	13451319	13451320	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	10028	10028	2,13450756,13451290	0,0,0
chr1	23701349	23701350	chr1	23701887	23701888	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=RPL11;ClosestR=RPL11	10028	10028	0,0,0	2,23701323,23701886
chr1	46354388	46354389	chr1	46354924	46354925	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NSUN4;DisruptR=NSUN4;ClosestL=AL122001.1;ClosestR=AL122001.1	86871338	86871338	3,46354353,46354923	0,0,0
chr1	86871327	86871328	chr10	35830198	35830199	TRA	NA	+	+	[Svaba_SR=68,Svaba_PE=13],[Manta_PE=14,Manta_SR=0],[Lumpy_PE=2,Lumpy_SR=42]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=SELENOF;DisruptR=;ClosestL=;ClosestR=	86871338	33097970	14,86871329,35830200	0,0,0
chr1	86871392	86871393	chr10	33097469	33097470	TRA	NA	+	+	[Manta_PE=36,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=SELENOF;DisruptR=AL121748.1;ClosestL=;ClosestR=ITGB1-DT	86871339	33097969	0,0,0	0,0,0
chr1	110046257	110046258	chr1	110046779	110046780	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=STRIP1;DisruptR=STRIP1;ClosestL=AL160006.1;ClosestR=AL160006.1	86871339	86871339	0,0,0	0,0,0
chr1	151396232	151396233	chr1	151396740	151396741	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=PSMB4;ClosestR=PSMB4	144105059	144105059	0,0,0	0,0,0
chr1	154139029	154139030	chr1	154139559	154139560	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NUP210L;DisruptR=NUP210L;ClosestL=TPM3;ClosestR=TPM3	144105059	144105059	2,154138999,154139558	0,0,0
chr1	186628234	186628235	chr1	186628797	186628798	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	169275276	169275276	2,186628220,186628796	0,0,0
chr1	207807887	207807888	chr1	207841472	207841473	DEL	NA	+	-	[Svaba_SR=43,Svaba_PE=42],[Manta_PE=40,Manta_SR=29],[Lumpy_PE=26,Lumpy_SR=25]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=MIR29B2CHG;DisruptR=MIR29B2CHG;ClosestL=MIR29B2;ClosestR=	224458848	224458848	25,207807885,207841471	0,0,0
chr1	211847672	211847673	chr1	211848192	211848193	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AL445488.1;DisruptR=AL445488.1;ClosestL=LPGAT1;ClosestR=LPGAT1	224458848	224458848	0,0,0	0,0,0
chr1	224458900	224458901	chr1	224612417	224612418	DUP	NA	-	+	[Svaba_SR=175,Svaba_PE=160],[Manta_PE=160,Manta_SR=165],[Lumpy_PE=148,Lumpy_SR=65]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=CNIH3;DisruptR=AC096537.1,CNIH3;ClosestL=;ClosestR=	224458849	224612442	0,0,0	0,0,0
chr1	224595092	224595093	chr1	224598331	224598332	DEL	NA	+	-	[Svaba_SR=136,Svaba_PE=149],[Manta_PE=175,Manta_SR=133]	manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=CNIH3;DisruptR=CNIH3;ClosestL=AC096537.1;ClosestR=AC096537.1	224612442	224612442	0,0,0	0,0,0
chr1	234076739	234076740	chr1	234077257	234077258	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=SLC35F3;DisruptR=SLC35F3;ClosestL=;ClosestR=	224612443	224612443	2,234076715,234077256	0,0,0
chr2	2748035	2748036	chr2	2748612	2748613	DEL	NA	+	-	[Svaba_SR=1,Svaba_PE=4]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=AC018685.1;ClosestR=AC018685.1	10005	10005	2,2748026,2748611	0,0,0
chr2	9239807	9239808	chr2	9240318	9240319	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ASAP2;DisruptR=ASAP2;ClosestL=;ClosestR=	10005	10005	2,9239757,9240280	0,0,0
chr2	47356055	47356056	chr2	47356570	47356571	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=EPCAM;DisruptR=EPCAM;ClosestL=RN7SKP119;ClosestR=RN7SKP119	10005	10005	3,47356021,47356569	2,47356021,47356569
chr2	78663700	78663701	chr11	22789446	22789447	TRA	NA	-	-	[Manta_PE=0,Manta_SR=2]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GAS2;ClosestL=;ClosestR=	10005	128355	0,0,0	0,0,0
chr2	78663734	78663735	chr11	22789447	22789448	TRA	NA	+	+	[Manta_PE=0,Manta_SR=16]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GAS2;ClosestL=;ClosestR=	10005	128355	0,0,0	0,0,0
chr2	79799640	79799641	chr2	79806960	79806961	INV	NA	+	+	[Lumpy_PE=3,Lumpy_SR=1]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=CTNNA2;DisruptR=CTNNA2;ClosestL=;ClosestR=	10005	10005	2,79799638,79806961	0,0,0
chr2	94282212	94282213	chr2	94289917	94289918	DEL	NA	+	-	[Manta_PE=17,Manta_SR=62]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	10005	10005	47,94282214,94289917	0,0,0
chr2	108773172	108773173	chr2	108773687	108773688	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=RANBP2;DisruptL=RANBP2;DisruptR=RANBP2;ClosestL=CCDC138;ClosestR=CCDC138	10005	10005	0,0,0	0,0,0
chr2	187258261	187258262	chr19	54468920	54468921	TRA	NA	-	+	[Lumpy_PE=3,Lumpy_SR=1]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC007319.1;DisruptR=CDC42EP5;ClosestL=RNU6-989P;ClosestR=LENG9	242183395	58607515	18,187258294,54468924	2,187258258,54468924
chr3	13200020	13200021	chr18	78238497	78238498	TRA	NA	+	+	[Svaba_SR=0,Svaba_PE=13]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	24523547	80263172	0,0,0	0,0,0
chr3	24523614	24523615	chr3	24524687	24524688	INV	NA	-	-	[Svaba_SR=99,Svaba_PE=177],[Manta_PE=319,Manta_SR=222],[Lumpy_PE=231,Lumpy_SR=171]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=THRB-AS1;DisruptR=THRB-AS1;ClosestL=MIR4792;ClosestR=MIR4792	24523548	24523548	3,24523612,24524690	0,0,0
chr3	25359110	25359111	chr12	72273111	72273112	TRA	NA	+	-	[Svaba_SR=141,Svaba_PE=87],[Manta_PE=122,Manta_SR=151],[Lumpy_PE=76,Lumpy_SR=61]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RARB;DisruptR=TRHDE-AS1,TRHDE;Fusion=RARB-TRHDE;ClosestL=RNA5SP126;ClosestR=	25359526	133264924	21,25359121,72273108	0,0,0
chr3	25359198	25359199	chr10	58717808	58717809	TRA	NA	+	+	[Manta_PE=82,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RARB;DisruptR=BICC1;ClosestL=RNA5SP126;ClosestR=FAM133CP	25359526	33097970	0,0,0	0,0,0
chr3	25359567	25359568	chr10	58717463	58717464	TRA	NA	+	-	[Svaba_SR=57,Svaba_PE=60],[Manta_PE=121,Manta_SR=142]	svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RARB;DisruptR=BICC1;Fusion=RARB-BICC1;ClosestL=RNA5SP126;ClosestR=FAM133CP	25359527	33097970	81,25359569,58717462	0,0,0
chr3	25359637	25359638	chr12	72273441	72273442	TRA	NA	+	+	[Manta_PE=37,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RARB;DisruptR=TRHDE-AS1,TRHDE;Fusion=RARB-TRHDE-AS1;ClosestL=RNA5SP126;ClosestR=	25359527	133264924	0,0,0	0,0,0
chr3	26390425	26390426	chr6	26193812	26193813	TRA	NA	-	-	[Manta_PE=56,Manta_SR=82]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=HIST1H1PS1	26410780	89830	75,26390426,26193809	0,0,0
chr3	26622429	26622430	chr3	26623007	26623008	INV	NA	+	+	[Manta_PE=319,Manta_SR=250],[Lumpy_PE=288,Lumpy_SR=172]	manta,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC099754.1;DisruptR=LRRC3B;Fusion=LRRC3B+AC099754.1;ClosestL=LRRC3B;ClosestR=AC099754.1	26622988	26622989	94,26622431,26623009	0,0,0
chr3	40113222	40113223	chr3	40113742	40113743	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=MYRIP;DisruptR=MYRIP;ClosestL=;ClosestR=	26622989	26622989	2,40113245,40113789	0,0,0
chr3	45908065	45908066	chr3	45908623	45908624	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=LZTFL1;DisruptR=LZTFL1;ClosestL=RF00019;ClosestR=RF00019	26622989	26622989	0,0,0	0,0,0
chr3	47040022	47040023	chr3	47040606	47040607	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=SETD2;DisruptL=SETD2;DisruptR=SETD2;ClosestL=MRPL57P3;ClosestR=MRPL57P3	26622989	26622989	2,47040009,47040605	2,47040009,47040605
chr3	60147025	60147026	chr3	60218814	60218815	DEL	NA	+	-	[Svaba_SR=49,Svaba_PE=61],[Manta_PE=54,Manta_SR=41],[Lumpy_PE=38,Lumpy_SR=25]	svaba,manta,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;Cancer_census=FHIT;DisruptL=FHIT;DisruptR=FHIT;ClosestL=;ClosestR=	26622989	26622989	20,60147027,60218813	0,0,0
chr3	60886452	60886453	chr3	61027540	61027541	DEL	NA	+	-	[Svaba_SR=67,Svaba_PE=93],[Manta_PE=89,Manta_SR=58],[Lumpy_PE=64,Lumpy_SR=45]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=FHIT;DisruptR=FHIT;ClosestL=;ClosestR=	26622989	26622989	45,60886452,61027539	0,0,0
chr3	128740248	128740249	chr3	128740754	128740755	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RAB7A;DisruptR=RAB7A;ClosestL=MARK2P8;ClosestR=MARK2P8	198139690	198139690	2,128740233,128740753	0,0,0
chr3	160173334	160173335	chr3	160173840	160173841	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=IL12A-AS1;DisruptR=IL12A-AS1;ClosestL=;ClosestR=	198139690	198139690	3,160173317,160173839	0,0,0
chr3	186724386	186724387	chr3	186795842	186795843	DEL	NA	+	-	[Svaba_SR=11,Svaba_PE=8],[Manta_PE=9,Manta_SR=10],[Lumpy_PE=6,Lumpy_SR=8]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=EIF4A2;DisruptL=KNG1,AC068631.1;DisruptR=RFC4;Fusion=RFC4+AC068631.1;ClosestL=AC109780.2;ClosestR=EIF4A2	198139690	198139690	10,186724386,186795841	0,0,0
chr3	186878250	186878251	chr3	186878758	186878759	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=ADIPOQ;ClosestR=	198139690	198139690	4,186878225,186878757	0,0,0
chr4	9718961	9718962	chr21	32436394	32436395	TRA	NA	+	-	[Svaba_SR=0,Svaba_PE=10]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=EVA1C;ClosestL=RF00017;ClosestR=	10011	46699872	8,9719185,32436396	6,9719185,32436396
chr4	85424739	85424740	chr4	85425243	85425244	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	49714365	49714365	0,0,0	0,0,0
chr4	90217256	90217257	chr4	90217835	90217836	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=CCSER1;DisruptR=CCSER1;ClosestL=;ClosestR=	49714365	49714365	3,90217237,90217834	0,0,0
chr4	165135676	165135677	chr4	165136176	165136177	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=TMEM192;DisruptR=TMEM192;ClosestL=;ClosestR=	190106211	190106211	2,165135660,165136175	0,0,0
chr4	183117498	183117499	chr4	183118050	183118051	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=WWC2;DisruptR=WWC2;ClosestL=WWC2-AS2;ClosestR=WWC2-AS2	190106211	190106211	2,183117501,183118076	0,0,0
chr5	28787888	28787889	chr5	28962988	28962989	DEL	NA	+	-	[Svaba_SR=66,Svaba_PE=76],[Manta_PE=60,Manta_SR=59],[Lumpy_PE=45,Lumpy_SR=31]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC008825.1;DisruptR=;ClosestL=;ClosestR=	28787898	28962928	3,28787891,28962988	0,0,0
chr5	46549599	46549600	chr5	46550126	46550127	DUP	NA	-	+	[Svaba_SR=0,Svaba_PE=17]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	28962928	28962928	14,46549604,46549945	12,46549604,46549945
chr5	119029738	119029739	chr5	119030250	119030251	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC008629.1;DisruptR=AC008629.1;ClosestL=DMXL1;ClosestR=DMXL1	180949083	180949083	4,119029723,119030249	0,0,0
chr5	174629585	174629586	chr5	174630133	174630134	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=HIGD1AP3;ClosestR=HIGD1AP3	180949083	180949083	4,174629571,174630146	0,0,0
chr6	17166125	17166126	chr6	17166633	17166634	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	89830	89830	0,0,0	0,0,0
chr6	21851897	21851898	chr6	21852667	21852668	DUP	NA	-	+	[Svaba_SR=0,Svaba_PE=8]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=CASC15;DisruptR=CASC15;ClosestL=;ClosestR=	89830	89830	0,0,0	0,0,0
chr6	31805044	31805045	chr6	31805614	31805615	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=LSM2;DisruptR=LSM2;ClosestL=HSPA1L;ClosestR=HSPA1L	89830	89830	2,31805014,31805609	0,0,0
chr6	35466843	35466844	chr6	35467362	35467363	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=FANCE;DisruptR=;ClosestL=RPL10A;ClosestR=FANCE	64637568	64637568	2,35466833,35467361	0,0,0
chr6	35523627	35523628	chr6	35524143	35524144	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=TULP1;ClosestR=TULP1	64637568	64637568	4,35523611,35524142	0,0,0
chr6	35588661	35588662	chr6	35589170	35589171	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=FKBP5;DisruptR=FKBP5;ClosestL=AL033519.1;ClosestR=AL033519.1	64637568	64637568	2,35588664,35589190	2,35588643,35589169
chr6	52165615	52165616	chr6	52166122	52166123	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=LINCMD1;ClosestR=LINCMD1	64637568	64637568	2,52165598,52166121	0,0,0
chr6	108328623	108328624	chr6	108329135	108329136	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AFG1L;DisruptR=AFG1L;ClosestL=Z98742.3;ClosestR=Z98742.3	64637569	64637569	4,108328610,108329146	0,0,0
chr6	125171938	125171939	chr20	62583281	62583282	TRA	NA	-	+	[Manta_PE=11,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=TPD52L1;DisruptR=;ClosestL=;ClosestR=BX640514.1	170740360	64334067	6,125172158,62583352	3,125172162,62583352
chr6	138452921	138452922	chr15	23472018	23472019	TRA	NA	-	-	[Svaba_SR=56,Svaba_PE=42],[Manta_PE=28,Manta_SR=54],[Lumpy_PE=10,Lumpy_SR=32]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NHSL1;DisruptR=;ClosestL=AL391669.1;ClosestR=	170740360	23434191	0,0,0	0,0,0
chr6	138453044	138453045	chr15	23467471	23467472	TRA	NA	+	+	[Svaba_SR=42,Svaba_PE=0],[Manta_PE=27,Manta_SR=56],[Lumpy_PE=8,Lumpy_SR=46]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NHSL1;DisruptR=;ClosestL=AL391669.1;ClosestR=	170740360	23434191	40,138453044,23467473	0,0,0
chr6	160654171	160654172	chrX	58046530	58046531	TRA	NA	+	+	[Manta_PE=8,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=LPA;DisruptR=;ClosestL=AL109933.2;ClosestR=	170740360	32274944	2,160654091,58046517	0,0,0
chr6	164412421	164412422	chr6	164412944	164412945	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	170740360	170740360	7,164412403,164412960	0,0,0
chr7	2653772	2653773	chr7	2654289	2654290	DEL	NA	+	-	[Svaba_SR=1,Svaba_PE=4]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=TTYH3;DisruptR=TTYH3;ClosestL=;ClosestR=	16339	16339	0,0,0	0,0,0
chr7	57403873	57403874	chr7	57436402	57436403	DEL	NA	+	-	[Svaba_SR=166,Svaba_PE=175],[Manta_PE=160,Manta_SR=142]	svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC237221.2;DisruptR=;ClosestL=AC237221.1;ClosestR=SAPCD2P2	104844571	104844571	80,57403873,57436401	0,0,0
chr7	57644596	57644597	chr7	57645126	57645127	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC064862.6;DisruptR=AC064862.6;ClosestL=BSNDP4;ClosestR=AC064862.1	104844571	104844571	0,0,0	0,0,0
chr7	74663344	74663345	chr7	74663869	74663870	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=GTF2I;DisruptR=GTF2I;ClosestL=;ClosestR=	104844571	104844571	4,74663326,74663868	0,0,0
chr7	78352521	78352522	chr7	78452931	78452932	DEL	NA	+	-	[Svaba_SR=57,Svaba_PE=79],[Manta_PE=76,Manta_SR=50],[Lumpy_PE=58,Lumpy_SR=31]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=RPL13AP17,MAGI2;DisruptR=MAGI2;ClosestL=;ClosestR=	104844571	104844571	34,78352523,78452929	0,0,0
chr7	78560889	78560890	chr7	78628368	78628369	DEL	NA	+	-	[Svaba_SR=52,Svaba_PE=73],[Manta_PE=66,Manta_SR=48],[Lumpy_PE=47,Lumpy_SR=35]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=MAGI2;DisruptR=MAGI2;ClosestL=;ClosestR=	104844571	104844571	36,78560889,78628367	0,0,0
chr7	86215351	86215352	chr7	86224383	86224384	DUP	NA	-	+	[Svaba_SR=52,Svaba_PE=43],[Manta_PE=57,Manta_SR=60],[Lumpy_PE=47,Lumpy_SR=42]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=;ClosestL=SOCS5P1;ClosestR=SOCS5P1	104844571	104844571	45,86215351,86224389	0,0,0
chr7	98264428	98264429	chr7	98264999	98265000	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=BRI3;DisruptR=BRI3;ClosestL=TECPR1;ClosestR=TECPR1	104844571	104844571	0,0,0	0,0,0
chr7	104844619	104844620	chr7	104971854	104971855	DUP	NA	-	+	[Svaba_SR=153,Svaba_PE=167],[Manta_PE=143,Manta_SR=127],[Lumpy_PE=120,Lumpy_SR=93]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=LHFPL3;DisruptR=LINC01004;ClosestL=AC091286.1;ClosestR=AC007384.1	104844572	104971803	76,104844620,104971856	0,0,0
chr7	110633842	110633843	chr7	110650481	110650482	DUP	NA	-	+	[Lumpy_PE=3,Lumpy_SR=2]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=IMMP2L	104971803	104971803	2,110633845,110650482	0,0,0
chr7	110753275	110753276	chr7	110754404	110754405	DEL	NA	+	-	[Svaba_SR=75,Svaba_PE=90],[Manta_PE=59,Manta_SR=61],[Lumpy_PE=53,Lumpy_SR=47]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=IMMP2L;DisruptR=IMMP2L;ClosestL=;ClosestR=	104971803	104971803	50,110753277,110754403	0,0,0
chr7	126106068	126106069	chr7	126526846	126526847	DEL	NA	+	-	[Svaba_SR=127,Svaba_PE=136],[Manta_PE=134,Manta_SR=111],[Lumpy_PE=100,Lumpy_SR=77]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GRM8;ClosestL=;ClosestR=AC000374.1	126105998	126526800	60,126106069,126526843	0,0,0
chr7	126458433	126458434	chr7	126527386	126527387	INV	NA	-	-	[Svaba_SR=47,Svaba_PE=118],[Manta_PE=149,Manta_SR=118],[Lumpy_PE=105,Lumpy_SR=91]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=GRM8;DisruptR=GRM8;ClosestL=;ClosestR=AC000374.1	126458400	126526800	75,126458435,126527385	0,0,0
chr7	128368987	128368988	chr7	128369583	128369584	DEL	NA	+	-	[Svaba_SR=3,Svaba_PE=4]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=PRRT4;ClosestR=PRRT4	126526800	126526800	0,0,0	0,0,0
chr7	133343688	133343689	chr7	133344192	133344193	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=EXOC4;DisruptR=EXOC4;ClosestL=;ClosestR=	126526800	126526800	0,0,0	0,0,0
chr7	139362578	139362579	chr7	139363097	139363098	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=LUC7L2,C7orf55-LUC7L2;DisruptR=LUC7L2,C7orf55-LUC7L2;Fusion=LUC7L2+C7orf55-LUC7L2|C7orf55-LUC7L2+LUC7L2;ClosestL=AC083880.1;ClosestR=AC083880.1	144214183	144214183	2,139362563,139363096	0,0,0
chr7	140298726	140298727	chr7	140299253	140299254	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=SLC37A3;DisruptR=SLC37A3;ClosestL=PPP1R2P6;ClosestR=PPP1R2P6	144214183	144214183	2,140298712,140299252	2,140298729,140299269
chr7	151049569	151049570	chr15	84141972	84141973	TRA	NA	+	-	[Svaba_SR=156,Svaba_PE=176],[Manta_PE=164,Manta_SR=127]	manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ASIC3;DisruptR=;ClosestL=ABCB8;ClosestR=EFL1P1	151049493	84142010	70,151049571,84141971	0,0,0
chr8	31947052	31947053	chr8	31947681	31947682	DEL	NA	+	-	[Svaba_SR=2,Svaba_PE=4]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NRG1;DisruptR=NRG1;ClosestL=;ClosestR=	71162	71162	0,0,0	0,0,0
chr8	39930785	39930786	chr8	39931342	39931343	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC007991.3;DisruptR=AC007991.3;ClosestL=IDO1;ClosestR=IDO1	71162	71162	2,39930763,39931336	0,0,0
chr8	46112126	46112127	chr8	46112684	46112685	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	71162	71162	0,0,0	2,46112050,46112620
chr8	46260265	46260266	chr8	46260918	46260919	DEL	NA	+	-	[Svaba_SR=2,Svaba_PE=4]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	71162	71162	0,0,0	0,0,0
chr8	77605182	77605183	chr8	77606002	77606003	INV	NA	-	-	[Svaba_SR=0,Svaba_PE=9]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	145078494	145078494	0,0,0	0,0,0
chr8	77606003	77606004	chr8	111051100	111051101	DUP	NA	-	+	[Svaba_SR=2,Svaba_PE=2]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;gap;Cancer_census=HEY1,COX6C,NBN,CDH17,PABPC1,EIF3E,RUNX1T1,UBR5,CNBD1,RSPO2;DisruptL=;DisruptR=;ClosestL=;ClosestR=	145078494	145078494	2,77606003,111051106	0,0,0
chr8	94466680	94466681	chr8	94467190	94467191	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RAD54B;DisruptR=RAD54B;ClosestL=;ClosestR=	145078494	145078494	2,94466670,94467189	0,0,0
chr8	100976116	100976117	chr17	72484891	72484892	TRA	NA	-	-	[Manta_PE=4,Manta_SR=35]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=LINC00511;ClosestL=RN7SL685P;ClosestR=	145078494	83247341	2,100976122,72484786	2,100976096,72484888
chr8	111050190	111050191	chr8	111051352	111051353	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=8],[Manta_PE=5,Manta_SR=5],[Lumpy_PE=6,Lumpy_SR=3]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	145078494	145078494	5,111050191,111051351	0,0,0
chr8	130235868	130235869	chr8	130262400	130262401	DUP	NA	-	+	[Svaba_SR=46,Svaba_PE=66],[Manta_PE=55,Manta_SR=45],[Lumpy_PE=47,Lumpy_SR=18]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ASAP1;DisruptR=ASAP1;ClosestL=;ClosestR=	145078494	145078494	36,130235869,130262402	0,0,0
chr9	28031836	28031837	chr9	28059141	28059142	INV	NA	+	+	[Svaba_SR=57,Svaba_PE=77],[Manta_PE=70,Manta_SR=52],[Lumpy_PE=65,Lumpy_SR=14]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=LINGO2;DisruptR=LINGO2;ClosestL=;ClosestR=	28059155	28059155	40,28031837,28059150	0,0,0
chr9	28031864	28031865	chr9	28034468	28034469	INV	NA	-	-	[Svaba_SR=59,Svaba_PE=66],[Manta_PE=69,Manta_SR=57],[Lumpy_PE=44,Lumpy_SR=37]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=LINGO2;DisruptR=LINGO2;ClosestL=;ClosestR=	28059155	28059155	34,28031863,28034456	0,0,0
chr9	28034287	28034288	chr9	28157693	28157694	DEL	NA	+	-	[Svaba_SR=52,Svaba_PE=73],[Manta_PE=72,Manta_SR=47],[Lumpy_PE=58,Lumpy_SR=12]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=LINGO2;DisruptR=LINGO2;ClosestL=;ClosestR=AL451124.1	28059155	28157722	36,28034301,28157692	0,0,0
chr9	35947285	35947286	chr9	35947827	35947828	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=PGAM1P2;ClosestR=PGAM1P2	30338984	30338984	0,0,0	3,35947266,35947826
chr9	37103414	37103415	chr9	37103979	37103980	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=AL512604.2;ClosestR=AL512604.2	30338984	30338984	2,37103406,37103825	0,0,0
chr9	62819301	62819302	chr9	63796175	63796176	INV	NA	+	+	[Svaba_SR=0,Svaba_PE=10]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;gap;DisruptL=;DisruptR=;ClosestL=LINC01410;ClosestR=CR786580.1	30338984	30338984	3,62819541,63796101	0,0,0
chr9	95355081	95355082	chr9	108129716	108129717	INV	NA	+	+	[Lumpy_PE=4,Lumpy_SR=2]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=KLF4,PTCH1,XPA,NR4A3;DisruptL=FANCC;DisruptR=;ClosestL=;ClosestR=	138313848	138313848	0,0,0	0,0,0
chr9	113434872	113434873	chr9	113435432	113435433	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=C9orf43;ClosestR=C9orf43	138313848	138313848	3,113434851,113435431	0,0,0
chr9	119500878	119500879	chr9	119519592	119519593	DEL	NA	+	-	[Lumpy_PE=2,Lumpy_SR=2]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC006288.1;DisruptR=AC006288.1;ClosestL=;ClosestR=	138313848	138313848	5,119500879,119519591	0,0,0
chr9	128338951	128338952	chr9	128339542	128339543	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=SLC27A4;ClosestR=SLC27A4	138313848	138313848	2,128338934,128339541	2,128339150,128339440
chr9	134532729	134532730	chr9	134533254	134533255	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AL669970.3;DisruptR=AL669970.3;ClosestL=AL669970.1;ClosestR=AL669970.1	138313848	138313848	0,0,0	0,0,0
chr9	136999293	136999294	chr9	136999844	136999845	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=CLIC3;ClosestR=CLIC3	138313848	138313848	0,0,0	0,0,0
chr9	137625605	137625606	chr9	137626118	137626119	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AL590627.2,EHMT1;DisruptR=AL590627.2,EHMT1;Fusion=AL590627.2+EHMT1|EHMT1+AL590627.2;ClosestL=ARRDC1-AS1;ClosestR=ARRDC1-AS1	138313848	138313848	4,137625590,137626117	0,0,0
chr10	7017548	7017549	chr19	17286001	17286002	TRA	NA	-	+	[Svaba_SR=70,Svaba_PE=87],[Manta_PE=71,Manta_SR=60],[Lumpy_PE=48,Lumpy_SR=50]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=;DisruptR=ANKLE1;ClosestL=;ClosestR=AC010463.1	7592026	90733	2,7017546,17286001	0,0,0
chr10	7090913	7090914	chr19	17286830	17286831	TRA	NA	+	-	[Svaba_SR=53,Svaba_PE=69],[Manta_PE=63,Manta_SR=42],[Lumpy_PE=47,Lumpy_SR=32]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=ANKLE1;ClosestL=AL590095.1;ClosestR=AC010463.1	7592026	90733	34,7090911,17286829	0,0,0
chr10	7592409	7592410	chr18	9868619	9868620	TRA	NA	-	-	[Svaba_SR=61,Svaba_PE=58],[Manta_PE=62,Manta_SR=56],[Lumpy_PE=38,Lumpy_SR=38]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ITIH5;DisruptR=;ClosestL=;ClosestR=RAB31	7592027	9868589	42,7592408,9868618	0,0,0
chr10	7650900	7650901	chr13	105676628	105676629	TRA	NA	-	+	[Manta_PE=12,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ITIH5;DisruptR=;ClosestL=;ClosestR=AL359745.1	7592027	114354111	0,0,0	0,0,0
chr10	33097477	33097478	chr10	35830131	35830132	DEL	NA	+	-	[Svaba_SR=0,Svaba_PE=15],[Manta_PE=22,Manta_SR=19],[Lumpy_PE=10,Lumpy_SR=21]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AL121748.1;DisruptR=;ClosestL=ITGB1-DT;ClosestR=	33097969	33097970	13,33097526,35830131	0,0,0
chr10	36516279	36516280	chrX	46497468	46497469	TRA	NA	+	-	[Svaba_SR=0,Svaba_PE=9],[Manta_PE=10,Manta_SR=0]	svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=NAMPTP1;ClosestR=KRBOX4	33097970	32274944	8,36516497,46497467	6,36516497,46497467
chr10	53716588	53716589	chr10	53717135	53717136	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0],[Manta_PE=3,Manta_SR=4]	svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	33097970	33097970	4,53716585,53717134	0,0,0
chr10	58717661	58717662	chr12	72273293	72273294	TRA	NA	+	+	[Svaba_SR=120,Svaba_PE=64],[Manta_PE=65,Manta_SR=151],[Lumpy_PE=33,Lumpy_SR=107]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=BICC1;DisruptR=TRHDE-AS1,TRHDE;Fusion=BICC1-TRHDE-AS1;ClosestL=FAM133CP;ClosestR=	33097970	133264924	82,58717663,72273296	0,0,0
chr10	81882049	81882050	chr10	82067909	82067910	DEL	NA	+	-	[Svaba_SR=27,Svaba_PE=29],[Manta_PE=28,Manta_SR=23],[Lumpy_PE=17,Lumpy_SR=16]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NRG3;DisruptR=NRG3;ClosestL=;ClosestR=	87940550	87940550	19,81882050,82067902	0,0,0
chr10	87940541	87940542	chr10	87952583	87952584	DEL	NA	+	-	[Svaba_SR=124,Svaba_PE=108],[Manta_PE=99,Manta_SR=103],[Lumpy_PE=69,Lumpy_SR=55]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;Cancer_census=PTEN;DisruptL=PTEN;DisruptR=PTEN;ClosestL=RPL11P3;ClosestR=RPL11P3	87940550	87952531	0,0,0	0,0,0
chr11	1584660	1584661	chr11	1585166	1585167	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=KRTAP5-1,KRTAP5-AS1;DisruptR=KRTAP5-1,KRTAP5-AS1;ClosestL=KRTAP5-2;ClosestR=KRTAP5-2	128355	128355	0,0,0	2,1584627,1585165
chr11	5194108	5194109	chr13	21818608	21818609	TRA	NA	+	+	[Svaba_SR=0,Svaba_PE=17],[Manta_PE=17,Manta_SR=0]	manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=OR51V1;ClosestR=	128355	16000006	30,5194101,21818603	26,5194101,21818603
chr11	37438373	37438374	chr11	40838306	40838307	INV	NA	-	-	[Svaba_SR=6,Svaba_PE=5],[Manta_PE=5,Manta_SR=4],[Lumpy_PE=2,Lumpy_SR=4]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=LRRC4C;ClosestL=;ClosestR=	128355	81074540	4,37438375,40838305	0,0,0
chr11	37438548	37438549	chr11	40837708	40837709	INV	NA	+	+	[Manta_PE=5,Manta_SR=6],[Lumpy_PE=5,Lumpy_SR=4]	lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=LRRC4C;ClosestL=;ClosestR=	128355	81074540	4,37438554,40837698	0,0,0
chr11	47128140	47128141	chr11	47128642	47128643	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC090589.2,C11orf49;DisruptR=AC090589.2,C11orf49;ClosestL=;ClosestR=	81074540	81074540	0,0,0	0,0,0
chr11	66255485	66255486	chr11	66256032	66256033	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=KLC2;ClosestR=KLC2	81074540	81074540	2,66255456,66256031	0,0,0
chr11	80635259	80635260	chr11	81380200	81380201	DEL	NA	+	-	[Svaba_SR=8,Svaba_PE=8],[Manta_PE=8,Manta_SR=6],[Lumpy_PE=5,Lumpy_SR=5]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=;ClosestL=ARL6IP1P3;ClosestR=	81074540	81382721	6,80635259,81380199	0,0,0
chr11	81074558	81074559	chr11	81382736	81382737	DEL	NA	+	-	[Svaba_SR=94,Svaba_PE=121],[Manta_PE=119,Manta_SR=82]	manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	81074541	81382722	54,81074556,81382735	0,0,0
chr11	114013567	114013568	chr11	114014082	114014083	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	135076522	135076522	0,0,0	2,114013548,114014081
chr12	19642851	19642852	chr12	19643401	19643402	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AEBP2;DisruptR=AEBP2;ClosestL=;ClosestR=	41087	41087	0,0,0	0,0,0
chr12	34601104	34601105	chr12	34601656	34601657	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	41087	41087	0,0,0	0,0,0
chr12	45745813	45745814	chr12	45746359	45746360	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=ARID2;DisruptL=ARID2;DisruptR=ARID2;ClosestL=AC008124.1;ClosestR=AC008124.1	41087	41087	2,45745798,45746358	0,0,0
chr12	47300446	47300447	chr12	47301000	47301001	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	41087	41087	2,47300431,47300999	0,0,0
chr12	51977265	51977266	chr12	51978740	51978741	INV	NA	+	+	[Lumpy_PE=2,Lumpy_SR=2]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ACVR1B;DisruptR=ACVR1B;ClosestL=RNU6-574P;ClosestR=RNU6-574P	41087	41087	0,0,0	0,0,0
chr12	128912716	128912717	chr12	128913250	128913251	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=GLT1D1;DisruptR=GLT1D1;ClosestL=;ClosestR=	133264924	133264924	2,128912727,128913282	0,0,0
chr13	16792007	16792008	chr13	17214295	17214296	DUP	NA	-	+	[Manta_PE=7,Manta_SR=0]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	16000006	16000006	2,16791996,17214432	3,16792047,17214178
chr13	98630841	98630842	chr13	98631351	98631352	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=CYCSP35;ClosestR=CYCSP35	114354111	114354111	2,98630877,98631406	0,0,0
chr14	34520778	34520779	chr14	34521320	34521321	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=EAPP;DisruptR=EAPP;ClosestL=;ClosestR=AL445363.3	18697903	18697903	0,0,0	0,0,0
chr14	40748746	40748747	chr14	40774902	40774903	DUP	NA	-	+	[Svaba_SR=20,Svaba_PE=23],[Manta_PE=19,Manta_SR=16],[Lumpy_PE=18,Lumpy_SR=13]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	18697903	18697903	16,40748748,40774904	0,0,0
chr14	101298973	101298974	chr14	101299485	101299486	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	106883618	106883618	7,101298951,101299484	0,0,0
chr15	22983571	22983572	chr15	22984074	22984075	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=TUBGCP5;DisruptR=TUBGCP5;ClosestL=CYFIP1;ClosestR=CYFIP1	23434190	23434190	2,22983574,22984091	0,0,0
chr15	23440457	23440458	chr15	23461730	23461731	INV	NA	-	-	[Svaba_SR=0,Svaba_PE=9],[Manta_PE=23,Manta_SR=0]	manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=GOLGA6L2;DisruptR=;ClosestL=AC100756.2;ClosestR=GOLGA6L2	23434191	23434191	0,0,0	0,0,0
chr15	23440459	23440460	chr20	38645823	38645824	TRA	NA	-	-	[Svaba_SR=20,Svaba_PE=8],[Manta_PE=49,Manta_SR=49],[Lumpy_PE=17,Lumpy_SR=14]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=GOLGA6L2;DisruptR=ARHGAP40;Fusion=GOLGA6L2-ARHGAP40;ClosestL=AC100756.2;ClosestR=	23434191	64334067	24,23440459,38645822	0,0,0
chr15	23461731	23461732	chr20	38646023	38646024	TRA	NA	-	+	[Svaba_SR=63,Svaba_PE=40],[Manta_PE=39,Manta_SR=62]	svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=ARHGAP40;ClosestL=GOLGA6L2;ClosestR=	23434191	64334067	32,23461730,38646025	0,0,0
chr15	23467373	23467374	chr15	23472017	23472018	DEL	NA	+	-	[Svaba_SR=0,Svaba_PE=24],[Manta_PE=39,Manta_SR=0]	svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	23434191	23434191	0,0,0	0,0,0
chr15	23586513	23586514	chr15	23747555	23747556	INV	NA	+	+	[Svaba_SR=108,Svaba_PE=117],[Manta_PE=107,Manta_SR=99],[Lumpy_PE=82,Lumpy_SR=78]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=MKRN3;DisruptR=;ClosestL=AC126407.1;ClosestR=	23586612	23747521	66,23586512,23747557	0,0,0
chr15	41329093	41329094	chr15	41336311	41336312	DUP	NA	-	+	[Svaba_SR=127,Svaba_PE=129],[Manta_PE=111,Manta_SR=100],[Lumpy_PE=99,Lumpy_SR=80]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=OIP5;DisruptR=NUSAP1;ClosestL=NUSAP1;ClosestR=OIP5	23747521	23747521	69,41329096,41336313	0,0,0
chr15	41329559	41329560	chr15	41336311	41336312	DUP	NA	-	+	[Svaba_SR=0,Svaba_PE=60]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=OIP5;DisruptR=NUSAP1;ClosestL=NUSAP1;ClosestR=OIP5	23747521	23747521	0,0,0	0,0,0
chr15	90509439	90509440	chr15	90509985	90509986	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=IQGAP1;ClosestR=IQGAP1	84142011	84142011	2,90509552,90510115	0,0,0
chr16	1530533	1530534	chr16	1531062	1531063	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=TMEM204,IFT140;DisruptR=AL031719.1,TMEM204,IFT140;Fusion=TMEM204+AL031719.1;ClosestL=AL031719.1;ClosestR=AL031705.1	10005	10005	3,1530525,1531061	0,0,0
chr16	9198204	9198205	chr16	9198738	9198739	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	10005	10005	2,9198185,9198737	0,0,0
chr16	18802583	18802584	chr16	18803138	18803139	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=AC138811.1;ClosestL=AC138811.1;ClosestR=ARL6IP1	34502581	34502581	2,18802568,18803137	0,0,0
chr16	30456098	30456099	chr16	30456598	30456599	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=RF00019;ClosestR=RF00019	34502581	34502581	2,30456078,30456597	2,30456078,30456597
chr16	58590640	58590641	chr16	58629426	58629427	DEL	NA	+	-	[Svaba_SR=138,Svaba_PE=177],[Manta_PE=174,Manta_SR=121],[Lumpy_PE=128,Lumpy_SR=85]	manta,lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=CNOT1;DisruptR=CNOT1;ClosestL=AC010287.1;ClosestR=	58590672	58629426	3,58590645,58629424	0,0,0
chr16	75853375	75853376	chr16	75866297	75866298	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=2],[Manta_PE=4,Manta_SR=5],[Lumpy_PE=3,Lumpy_SR=3]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC105430.1;DisruptR=;ClosestL=RNA5SP430;ClosestR=RNA5SP430	78894747	78894747	5,75853376,75866296	0,0,0
chr16	75867372	75867373	chr16	79651770	79651771	DEL	NA	+	-	[Svaba_SR=3,Svaba_PE=3],[Manta_PE=3,Manta_SR=3],[Lumpy_PE=2,Lumpy_SR=2]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=MAF;DisruptL=;DisruptR=;ClosestL=RNA5SP430;ClosestR=	78894747	79061090	0,0,0	0,0,0
chr16	78098254	78098255	chr16	78117165	78117166	DEL	NA	+	-	[Svaba_SR=10,Svaba_PE=14],[Manta_PE=13,Manta_SR=8],[Lumpy_PE=12,Lumpy_SR=5]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=WWOX;ClosestL=WWOX;ClosestR=AC079414.3	78894747	78894747	7,78098256,78117162	0,0,0
chr16	78894741	78894742	chr16	79061103	79061104	DEL	NA	+	-	[Svaba_SR=63,Svaba_PE=89],[Manta_PE=80,Manta_SR=46],[Lumpy_PE=60,Lumpy_SR=42]	svaba,manta,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=WWOX;DisruptR=WWOX;ClosestL=AC027279.1;ClosestR=AC009145.3	78894747	79061090	39,78894737,79061102	0,0,0
chr16	79634967	79634968	chr22	25678881	25678882	TRA	NA	+	-	[Svaba_SR=3,Svaba_PE=7],[Lumpy_PE=4,Lumpy_SR=3]	lumpy,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GRK3;ClosestL=AC009159.1;ClosestR=	79061090	10514978	3,79634966,25678880	0,0,0
chr16	79652066	79652067	chr22	25679626	25679627	TRA	NA	-	-	[Manta_PE=2,Manta_SR=4]	manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GRK3;ClosestL=;ClosestR=	79061090	10514978	4,79652065,25679625	0,0,0
chr16	79652371	79652372	chr22	25679632	25679633	TRA	NA	+	+	[Manta_PE=3,Manta_SR=5],[Lumpy_PE=2,Lumpy_SR=3]	lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GRK3;ClosestL=;ClosestR=	79061090	10514978	3,79652373,25679639	0,0,0
chr16	79652373	79652374	chr22	25671271	25671272	TRA	NA	-	+	[Svaba_SR=2,Svaba_PE=3],[Lumpy_PE=3,Lumpy_SR=1]	svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=;DisruptR=GRK3;ClosestL=;ClosestR=	79061090	10514978	2,79652373,25671273	0,0,0
chr17	2614160	2614161	chr17	2614678	2614679	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=PAFAH1B1;DisruptR=PAFAH1B1;ClosestL=SAMD11P1;ClosestR=SAMD11P1	168977	168977	3,2614133,2614677	0,0,0
chr17	10151217	10151218	chr17	10151746	10151747	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;Cancer_census=GAS7;DisruptL=GAS7;DisruptR=GAS7;ClosestL=;ClosestR=	168977	168977	3,10151206,10151745	0,0,0
chr17	12733286	12733287	chr17	12733824	12733825	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=MYOCD;DisruptR=MYOCD;ClosestL=;ClosestR=	168977	168977	0,0,0	0,0,0
chr17	14363887	14363888	chr17	14364418	14364419	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=AC022816.1;ClosestR=AC022816.1	168977	168977	0,0,0	0,0,0
chr17	19858875	19858876	chr17	19859392	19859393	DEL	NA	+	-	[Svaba_SR=9,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ULK2;DisruptR=ULK2;ClosestL=AC015726.3;ClosestR=AC015726.3	168977	168977	2,19858844,19859391	0,0,0
chr17	35913525	35913526	chr17	35914063	35914064	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=LRRC37A9P;DisruptR=LRRC37A9P;ClosestL=AC015849.5;ClosestR=AC015849.5	168977	168977	2,35913513,35914062	0,0,0
chr17	78296098	78296099	chr17	78296614	78296615	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=LINC01993;ClosestR=LINC01993	83247341	83247341	3,78296068,78296612	0,0,0
chr17	81500783	81500784	chr17	81501312	81501313	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=ACTG1;ClosestR=ACTG1	83247341	83247341	4,81500766,81501311	0,0,0
chr18	68712224	68712225	chr18	68715588	68715589	DEL	NA	+	-	[Svaba_SR=65,Svaba_PE=72],[Manta_PE=67,Manta_SR=55],[Lumpy_PE=46,Lumpy_SR=40]	svaba,lumpy,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=TMX3;DisruptR=CCDC102B;ClosestL=CCDC102B;ClosestR=TMX3	80263172	80263172	42,68712224,68715587	0,0,0
chr19	5884170	5884171	chr19	5884742	5884743	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AC024592.3;DisruptR=AC024592.3;ClosestL=NDUFA11;ClosestR=NDUFA11	90733	90733	2,5884180,5884766	0,0,0
chr19	11508653	11508654	chr19	11509159	11509160	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ECSIT;DisruptR=ECSIT;ClosestL=ZNF653;ClosestR=ZNF653	90733	90733	2,11508640,11509158	0,0,0
chr19	17033889	17033890	chr19	17034411	17034412	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=CPAMD8;ClosestR=CPAMD8	90733	90733	3,17033882,17034435	0,0,0
chr19	17660655	17660656	chr19	17661185	17661186	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=UNC13A;DisruptR=UNC13A;ClosestL=;ClosestR=	90733	90733	2,17660644,17661184	0,0,0
chr19	21972202	21972203	chr19	21973101	21973102	DEL	NA	+	-	[Lumpy_PE=3,Lumpy_SR=1]	lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=ZNF208;DisruptR=ZNF208;ClosestL=AC003973.3;ClosestR=AC003973.3	90733	90733	0,0,0	0,0,0
chr19	33075140	33075141	chr19	33075694	33075695	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=GPATCH1;ClosestR=GPATCH1	58607515	58607515	0,0,0	0,0,0
chr19	38573533	38573534	chr19	38574068	38574069	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=RYR1;DisruptR=RYR1;ClosestL=MAP4K1;ClosestR=MAP4K1	58607515	58607515	3,38573492,38574049	0,0,0
chr19	44726730	44726731	chr19	44727288	44727289	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=RF00285;ClosestR=RF00285	58607515	58607515	2,44726711,44727287	0,0,0
chr19	44868677	44868678	chr19	44869200	44869201	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NECTIN2;DisruptR=NECTIN2;ClosestL=AC011481.2;ClosestR=AC011481.2	58607515	58607515	2,44868653,44869210	0,0,0
chr19	46501976	46501977	chr19	46502487	46502488	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=PPP5D1;DisruptR=PPP5D1;ClosestL=AC011484.1;ClosestR=AC011484.1	58607515	58607515	2,46501963,46502486	0,0,0
chr20	13180082	13180083	chr20	13183452	13183453	DEL	NA	+	-	[Svaba_SR=103,Svaba_PE=130],[Manta_PE=158,Manta_SR=117]	manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;ClosestL=SPTLC3;ClosestR=SPTLC3	67260	67260	76,13180081,13183451	0,0,0
chr20	14982311	14982312	chr20	15033301	15033302	DEL	NA	+	-	[Svaba_SR=58,Svaba_PE=98],[Manta_PE=85,Manta_SR=43],[Lumpy_PE=67,Lumpy_SR=36]	svaba,manta,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=MACROD2;DisruptR=MACROD2;ClosestL=;ClosestR=RNU6-115P	67260	67260	35,14982310,15033300	0,0,0
chr20	15008178	15008179	chr20	15128171	15128172	DEL	NA	+	-	[Svaba_SR=15,Svaba_PE=18],[Manta_PE=14,Manta_SR=15],[Lumpy_PE=9,Lumpy_SR=14]	lumpy,svaba,manta	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=MACROD2;DisruptR=MACROD2;ClosestL=RNU6-1159P;ClosestR=	67260	67260	12,15008179,15128170	0,0,0
chr20	15019977	15019978	chr20	15033195	15033196	DEL	NA	+	-	[Svaba_SR=81,Svaba_PE=85],[Manta_PE=78,Manta_SR=65],[Lumpy_PE=53,Lumpy_SR=46]	manta,svaba,lumpy	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=MACROD2;DisruptR=MACROD2;ClosestL=RNU6-1159P;ClosestR=RNU6-115P	67260	67260	49,15019977,15033194	0,0,0
chr20	31974838	31974839	chr20	31975344	31975345	DEL	NA	+	-	[Svaba_SR=2,Svaba_PE=4]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=XKR7;DisruptR=XKR7;ClosestL=AL031658.2;ClosestR=AL031658.2	67260	67260	0,0,0	0,0,0
chr20	34778854	34778855	chr20	34779384	34779385	DEL	NA	+	-	[Svaba_SR=7,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NCOA6;DisruptR=NCOA6;ClosestL=;ClosestR=	64334067	64334067	4,34778830,34779383	0,0,0
chr20	38314440	38314441	chr20	38315006	38315007	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=AL359555.1,BPI;DisruptR=AL359555.1,BPI;ClosestL=AL359555.3;ClosestR=AL359555.3	64334067	64334067	0,0,0	0,0,0
chr20	50035342	50035343	chr20	50035850	50035851	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=TRERNA1;ClosestR=TRERNA1	64334067	64334067	2,50035325,50035849	0,0,0
chr20	56404953	56404954	chr20	56405477	56405478	DEL	NA	+	-	[Svaba_SR=6,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=CSTF1;DisruptR=CSTF1;ClosestL=CASS4;ClosestR=CASS4	64334067	64334067	5,56404934,56405476	0,0,0
chr20	57801625	57801626	chr20	57802131	57802132	DEL	NA	+	-	[Svaba_SR=7,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=;ClosestR=	64334067	64334067	0,0,0	0,0,0
chr21	41446816	41446817	chr21	41448904	41448905	DEL	NA	+	-	[Svaba_SR=7,Svaba_PE=13],[Manta_PE=18,Manta_SR=16],[Lumpy_PE=15,Lumpy_SR=6]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=MX1;DisruptR=MX1;ClosestL=AP001610.1;ClosestR=AP001610.1	46699872	46699872	6,41446813,41448903	0,0,0
chr22	33363262	33363263	chr22	33442412	33442413	DEL	NA	+	-	[Svaba_SR=69,Svaba_PE=96],[Manta_PE=83,Manta_SR=65],[Lumpy_PE=70,Lumpy_SR=38]	lumpy,manta,svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;COSMIC;DisruptL=LARGE1;DisruptR=LARGE1;ClosestL=;ClosestR=MIR4764	50807810	50807810	44,33363266,33442406	0,0,0
chr22	35388024	35388025	chr22	35388524	35388525	DEL	NA	+	-	[Svaba_SR=5,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=HMOX1;DisruptR=HMOX1;ClosestL=Z82244.1;ClosestR=Z82244.1	50807810	50807810	3,35388012,35388534	0,0,0
chr22	41548775	41548776	chr22	41549345	41549346	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;ClosestL=POLR3H;ClosestR=POLR3H	50807810	50807810	3,41548760,41549344	0,0,0
chr22	42061766	42061767	chr22	42062277	42062278	DEL	NA	+	-	[Svaba_SR=4,Svaba_PE=0]	svaba	COLO-829-NovaSeq--COLO-829BL-NovaSeq	known=;DisruptL=NAGA;DisruptR=NAGA;ClosestL=WBP2NL;ClosestR=WBP2NL	50807810	50807810	4,42061750,42062276	0,0,0