Software

Conpair

Conpair is a fast and robust method dedicated for human tumor-normal studies to perform concordance verification (i.e. samples coming from the same individual), as well as cross-individual contamination level estimation in whole-genome and whole-exome sequencing experiments. Importantly, our method of estimating contamination in the tumor samples is not affected by copy number changes and is able to detect contamination levels as low as 0.1%.

Paper

Conpair: Concordance and contamination estimator for matched tumor–normal pairs

https://github.com/nygenome/conpair

Contributors:

Other Contributors

Ewa A. Bergmann

Bo-Juen Chen

Vladimir Vacic

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